Code

(4) Data processing pipeline for cycleHCR (Gandin, Kim et al, 2025, Science)

Github: https://github.com/liulabspatial/CycleHCR-Pipeline

Archive, doi: 10.5281/zenodo.14780420

(3) Data and code for gene co-expression analysis (Dong et al, 2024, Nat. Genet.)

Archive, doi: 10.5281/zenodo.11406939

(2) Code for molecular simulation used in (Xie, Dong et al, 2022, Nat. Genet.)

Github: https://github.com/ZhangGroup-MITChemistry/Chrom_cluster

(1) Code for analyzing 3D ATAC-PALM data (Xie, Dong et al, 2020, Nat. Meth.)

Github: https://github.com/ammondongp/3D_ATAC_PALM

Created by Dall-E